NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208108_1001029

Scaffold Ga0208108_1001029


Overview

Basic Information
Taxon OID3300025367 Open in IMG/M
Scaffold IDGa0208108_1001029 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE22May08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3469
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051885Metagenome / Metatranscriptome143N
F066725Metagenome / Metatranscriptome126N
F078638Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0208108_10010291F078638AGGMKKFFRMSSKTESEKLGGMTVPKRSHDPAIIQKKFELIAKLLTLVNSLPPGTEAPNYLIMRKIFSIKKEIHDLDLMWRLTDEFYFQEYGVLSSIDLINTRKPWNAAINTIRYMDLQRDLMTMREKFPEWEFTLSDVRKHSTCKCSECQKQKLLTVKEEPLSKDEPSSSSSSSIEGLD
Ga0208108_10010292F051885N/AMSSSSKVEAPNTSSIATYVNMPLTKEQLKEKDKLSLQCIELAINLGVKQPKDFGECVEDLYNFKKKIKMYDPEFKFLDDKNVYIYQLLSRLDSIDSSLLPDMSKNTAICQQIHLENRVIRKNYPSWRVDFEQVLKTLKRNSNSEVQSKVRYILQVDKDGNPVLIREICNNSRSLGKDFECDCPDCKVSGDMKHLSLCPK
Ga0208108_10010296F066725N/AMCTRGVTWFTNPEGGEFTPTQLWDLREDLTKHLIIVLGRLTVELGSRFESPATLPHYMHLMHDTILKLKSIDSNWHLVYSAEKENCLRIMQHDCHCGFKNRRRKQL
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