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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025368 Open in IMG/M |
| Scaffold ID | Ga0208620_1000008 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Jun08 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 42027 |
| Total Scaffold Genes | 64 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (79.69%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Crystal Bog, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000324 | Metagenome / Metatranscriptome | 1299 | Y |
| F000857 | Metagenome / Metatranscriptome | 858 | Y |
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F004695 | Metagenome | 427 | Y |
| F049367 | Metagenome | 146 | N |
| F070626 | Metagenome | 123 | N |
| F086493 | Metagenome | 110 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208620_100000822 | F086493 | N/A | MMVNNMSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIADLIIWIRQQKESQNEVK |
| Ga0208620_100000840 | F000324 | GGA | MTINIGPSHSFTYDGARINIFHANKGEGLPKHSHTYAHATFCTSGSCYIRKEGKEIVVTKETQPINLIENEWHEIEALEDNTVFVNVFSEGKF |
| Ga0208620_100000846 | F049367 | AGGA | MALKLNLGTTQFGAPAPEAYARVTNFFGNKDNIQVQVSVHFSKDARDSNLSPVREDAHYIGLADLAGKGELMPAIYEVLKTMSQYQGATDV |
| Ga0208620_100000849 | F000857 | GGAG | MELNLDNEEAKINEDYYMKGNLEAGIEGVLARNNQMFNDVKSGTWSQTFKTDRIDYKIGAEDGQRYVQYTQHNVENIRQNCKERREFYKIHGTANPFFAGTFHAMDLPKCFAHEISSKWFNNRPWELIKQDRDDKILFYAIVNEYYSDFVCHPSGKIPLPYNPIIPTR |
| Ga0208620_100000853 | F004695 | AGG | MLFKQNLVVENLASPSGNRGIAEKVCHEAYMKMVDYLRLTQAKNTYNRFTDYHYLNIPVSESTEPIRGLDYIHPIVTPGIDYATAVITKCLMPDGKVNFEFERFDESDQDGAEQATDMVKYFLNNKNNSYMTIRDWAQDALLHKNGIVMVMPVRENIIQYKEVTGTRDQLKVFEIEAAQKGLKPLRQEMRKVDVNLQQAMMEAMQPGDEQEAEQEVDPGAELNEAIRNNTVYRAKYKLTGTKTNIRIKHVAQHYFVCNPTIPQIMYQDFVGFYEPMTIHEAKVQYPFIDMEEFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYARVVMLTTAWLRKDVDGDGEEEIVEVCYSGSYILYVKEVDFIPLANMCPKPITGNFFGYSLGERLVPIQEYATSIKRAELSFAMQASTPKMGVNPEFIDAEEIQRGVSALFILDRKFDPAKHVYEFAPLQGNLAYVESAMQSLKEDNMAMIGMTNPNDSLNPEVMKDGNSGFKLQTAMGPNQLIQDELIKNCAIAVQDLIHLVWHTMIQYADDYSIQQLAHICSEKGGPFLDAQKMANYEFIDRKMINIDLGLGFMSDENRLTRQQLITQAQQQFAQAMMMLTPDMPEMFEKARRPYEDTLRVLGVRHVDAYLPTLEEAMKILQAKSKAPPSAEDQLHQSKAQLNQATTQEVQAKTGKIVKETQQMDVDNMFDAMAAKKGNLKDVRID |
| Ga0208620_100000856 | F001059 | GGA | MDVYDIDALKADLPTAKELSQFVYDKTGIALDLIGKPKEEQYLAAKNALEGKKVPQDFITTDNPYVDKKDIIPIDEKKPFPPSRSDSLPPEESEIHHFNATNMPHPTHPQSDKKVQIMFRKYDNGVITYQIMGPTEMVAVGERINKYGQTVPERYSWDDPRTEEIMLRRQDGSMTEKGRGLYMYCTGEKGANIWPLIDKNIESVSAKNIADPWA |
| Ga0208620_100000863 | F070626 | AGGAGG | MEIEWSLAHPLHDVEDIVNMADNIFGDEVEDILTTERYIFRKNVTVASTVQIFDRSKEFLAVARVGNISGTGEFSDKLLGFCWFDRYGYTTYSNEEISNAKFHHVDLTLPAKTRVKLINAMIDQHILWAYQNGIPVVCSTSIRSDHSGFMRIHEKRGFKVSGSYAWIRTKEGLNGIKGIEIANN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |