NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209224_1000001

Scaffold Ga0209224_1000001


Overview

Basic Information
Taxon OID3300025371 Open in IMG/M
Scaffold IDGa0209224_1000001 Open in IMG/M
Source Dataset NameHypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)102872
Total Scaffold Genes142 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (43.66%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameMonarch Geyser, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035135Metagenome / Metatranscriptome173Y
F071411Metagenome / Metatranscriptome122Y
F083831Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209224_1000001121F071411N/AMSEDDDRMLDILINSADNRTELEKHMDYIAKLLKDNLQDVIDNAIDVQLYVSLPSKEPVGFDIGITIGGPNIRLIYSRGACKLQGAWGFQTDEKYIDNEICETILDYLTQA
Ga0209224_1000001134F035135N/AMTYVNEKFTTPLHPKRKILLPRSIYDQQQFITSFFFDVVDNDEYEYIIFTFLMKNAFKIYLNVWREQRKFINYLKTFKDEFKNAYDYYQRLLITTKQRIYDTTHAIACFFTFDDDIKEILTIYVNELFCNYVNDALC
Ga0209224_1000001138F083831N/AMMYKVEKIEVIRNKIFCTISNKYETLNSVPIENLKLARKNNKLYAKLKV
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