NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209224_1000020

Scaffold Ga0209224_1000020


Overview

Basic Information
Taxon OID3300025371 Open in IMG/M
Scaffold IDGa0209224_1000020 Open in IMG/M
Source Dataset NameHypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43199
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (47.30%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Associated Families13

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameMonarch Geyser, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056742Metagenome / Metatranscriptome137Y
F061983Metagenome / Metatranscriptome131Y
F063848Metagenome / Metatranscriptome129N
F070317Metagenome / Metatranscriptome123Y
F076263Metagenome / Metatranscriptome118Y
F076264Metagenome / Metatranscriptome118Y
F077499Metagenome / Metatranscriptome117Y
F077502Metagenome / Metatranscriptome117N
F080245Metagenome115N
F080247Metagenome / Metatranscriptome115Y
F085905Metagenome111N
F087442Metagenome / Metatranscriptome110N
F087445Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209224_100002039F080245N/AMIFVWSARVIMPGFREEIFVSPALINSLGELTEDVYEVGMFAVPHAGHALLFLPTMVIKLDDDLLKKLEETSIEDLNYPLNTISHVFT
Ga0209224_100002040F087442GAGGMMREGLVKAGNLVVDCKPCYIAGTGFVKDDVYVVSEGTVVFKWYDKIALITVNEEGTKITLLDIIDVRFLVERNENCLVTKL
Ga0209224_100002042F076263N/AMVSLEDLSAVLDDLEDLCARLPEGVTFHPTLELRRNYANEEATYIKFDCRNHRYVLTIVREGVAKTTRLSSREEMFRRLFPDYMGEGII
Ga0209224_100002043F080247N/AMIVWGKLIECLLDTDVNYLNGELFSNPLRIKGKFLVFGNLYTFERAISETGTEQVCVPIDATFMAYYEGMVAIMSFYLKEREMYANISLTDPETIKGFVNMSSFYKKYGISIPNLLDKIMYRKVPT
Ga0209224_100002044F061983AGGAGGLKKFMIKVTVVPINLFDEEGVLSEKEFEEVKKTMTYKGMKVLEIKDLGTDEVRKWMHFYTITAVSEGGGLLDCYYGDTINVEKLKNVGAIVIGDKDTQPVKTMKTLVAKWYNKQLVYEEKAYEICNKFVT
Ga0209224_100002046F085905GGAGGLSFPSSRLSQFDYVAMNAYWLNARLKYFTDPLLYALATGIWVINLMDDVDIAETGTQKNFEYGLVYIYSNSRIDTLFIVALTHYFNVKREKEYYRSIPMDALQSIMKSLVDFMNDKLKILDKLKEKLDERVILMMWNQLYIFVMGFLYGLYGRDAESVFQGIVAGHLLPFGVLETIRRYAKR
Ga0209224_100002047F063848N/AVAKKRRSVHDPVLSVIHYQEQLEKMAKAYEKSATRRNQRAVNGFSILKQVQETVRDYLNQASEAMKKPIIAQLGVEFLGVAMAYLKASNEGFSSYALTGRVAQIATLKATGVVNGTELTCAQVGEIINGMLKKVSGMTADPLTFTENDGICEATPANPMPKLSIASPSTGYTVSMNDILKAKSPEEVLMGK
Ga0209224_100002050F087445AGGMSDYELKRIFRMIPIEKRLMLALDTIQEYQSIQAKFNSLLDGLAMNAPRVREVVESAKKNRKPIDRLADMFMDMMETMLKSKAMSLTDEDRAKLKEKLKQVMESEE
Ga0209224_100002052F076264AGGCGGMSSISSAIQSMVNGLQNLFTAIVNVFGCAINAIGNTLSSLAQPIGYLIGVLSVFGSLIAIIWYVFRGRGGIGGLVGSIRNFFTSFF
Ga0209224_100002062F070317GGAMSNLEELKELNLEKTYKDAQEGEVCTVNKIYKGKLIDIISLIKDPATLSQKAMEFIQRRGNDVFYVFQCTTREGREVKLLVRQSFDPKSTFYGLMKKYKTIKVGDEINVFYNPEKRRYDFVL
Ga0209224_100002063F077502N/AMTDVAHIVLWVEQKLPEEAKLSELIDNIFSLITEIILNNLSQGKQPITFQTVQQVANAFKEMIYKSIEQSIGTLTDEVKSQVDAEFFKRLSSIYDKYYK
Ga0209224_100002065F077499GAGMADLFIFPQESLKPINYPKITNAEIIFILTISVPIGQHPNDDVPADDKLRFLETYMPLEFQKLQYMKTIDKALEILKYSLYSRESNVLVEIAEKINDTYNVKKLTEKIIDAECVKDITTIKVTLTEAKRRIYPDISLSKYVSANAKQLNMRKSEYYSRLFQCYIEQDNELNMLTLYRVSNIVFNFIRLNNLSHLIKNMKFKNEKIERLAEKIKQRVNITLEAMAEKRIAQTDENLLNSITIRIKEIDLG
Ga0209224_100002066F056742N/ALKLADCRYKCKQTYFRKSIFVKMFAKEVEKTYGVKLKTCEDFCKFYVLFLSVAEMLYGKHYNYGIFKAIVRGKPNLYMCVKCNQPFTAEESITHTLQHMKTLGYKPLAYKEEI
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