NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209224_1014101

Scaffold Ga0209224_1014101


Overview

Basic Information
Taxon OID3300025371 Open in IMG/M
Scaffold IDGa0209224_1014101 Open in IMG/M
Source Dataset NameHypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1296
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameMonarch Geyser, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038746Metagenome165Y
F067919Metagenome125N

Sequences

Protein IDFamilyRBSSequence
Ga0209224_10141012F038746AGGMIRKGNKYIMIIKTPKDLEDIRNNIDKYKDELKDGELIEIQIAKSAKYMLKMTLSKEGIKYEISGDDKKHVLTIENKEDAIALQKLIQILLAIAFNKPK
Ga0209224_10141013F067919GGGGGLSTRSLSRGKELILINKGDEIEFLIDDADDGRVWIIKPEYHTKKGIMILEKRNGYIIRLIEKDLRKLGVRNMNELIELIRTRPSETVENLIGEKVKISKVIIKNLNKKS
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