NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207957_1002159

Scaffold Ga0207957_1002159


Overview

Basic Information
Taxon OID3300025372 Open in IMG/M
Scaffold IDGa0207957_1002159 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3794
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F063276Metagenome129Y
F070810Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0207957_10021591F063276AGGAMQDSTFRQNLDFYSVLILGILLVVFAIYWNYTHPHITVKYDCSISEISPDYPIPVKEACRKLRADNSLQKPK
Ga0207957_10021592F070810AGGMETVDTIWEIKLLWDNQNKYWWNEVCADVVEIFGLPGDRFTSHPYHDCMLFRFKSKKDYQLCKILLSDKI
Ga0207957_10021597F009462AGGAGMELHESIKDTYTEQVIKEHEGFRLVLKKHEVLSPKGLFSVDMEQQHLKDGVVQDTATYNFFMTKEEMTILASALTA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.