NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209143_1003299

Scaffold Ga0209143_1003299


Overview

Basic Information
Taxon OID3300025373 Open in IMG/M
Scaffold IDGa0209143_1003299 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6443
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080678Metagenome115N
F092976Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209143_100329910F092976GGAGGMTVQEILHWKQELRRVRQEFLQVWQKCPKCGAKWADIAWDAESDHEFLLVECRSGHLFRADEQFWLFDYDDYSDAGVYAPSEETETEVSAYAG
Ga0209143_100329915F080678GGAGGMFVRKVDARTPIAEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI
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