NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209740_1000159

Scaffold Ga0209740_1000159


Overview

Basic Information
Taxon OID3300025374 Open in IMG/M
Scaffold IDGa0209740_1000159 Open in IMG/M
Source Dataset NameHot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - CON_C (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11662
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameConch Spring, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038745Metagenome / Metatranscriptome165Y
F051572Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0209740_100015914F051572AGGCGGMERSASLGFWLVMSSGRRCGGPFAEVWTLADVVLEGGCKKSVQFLNTRLELCVLAALIKTAPAGSMVRLRPEIVRRLVEELAAAAGRDRERIRNALLKKAGEVMAQLRRELGDKTPAEALLAKLAELFLKELEA
Ga0209740_100015915F038745N/AMDKAVVVVCGELMQISLAFSAYYPLCSGGPPCAYAEAVERLIRRAASAREAEELLEAMEGRVRLEELGLPAPALEVLTEELGAEAHWLDALAASFFRLYLGMHRRRRVDGRDVAFALCLWAQKKRREDPWNPLWRAAELKPEKLYTAEEAREALKINEALFRRLWRRALANEHAYGFQLILAALSLMATPTRSAP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.