NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209740_1000565

Scaffold Ga0209740_1000565


Overview

Basic Information
Taxon OID3300025374 Open in IMG/M
Scaffold IDGa0209740_1000565 Open in IMG/M
Source Dataset NameHot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - CON_C (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6752
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameConch Spring, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038745Metagenome / Metatranscriptome165Y
F051572Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0209740_10005651F051572N/ACKKSLQYLNTRLDLCVLAALIKTAPAGSMVRLRPEIARRLVEELAAAAGQDRERIRNALLKKAGEVLAQLRRELGDKTPAEALLAKLAELFLKELA
Ga0209740_10005652F038745N/ALRRPTLMDRIRFIPRPSRRFSMDKAVVVVCGELMQISLAFSAYYPLCSGGPPCAYAEAVEGLIHRAASARGAEELLEAINGRVRLEELGLPAPALEVLAEELGPEPRWLDALAASFFRLYLGLQKRRRVDGRDLALALCLWAQKKRREDPRNPLWRAAELKPDRLYTEEEARKALKIEERLFRRLWRRALAFHRGEKAYGFQLILAALSLMAAPPRSV
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