NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209740_1002896

Scaffold Ga0209740_1002896


Overview

Basic Information
Taxon OID3300025374 Open in IMG/M
Scaffold IDGa0209740_1002896 Open in IMG/M
Source Dataset NameHot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - CON_C (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2994
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameConch Spring, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043237Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0209740_10028962F043237AGGGGGMDLEKTSRYIAQLSRHGYKYAILGELSNYNREFVKRIDLEGFVFYLCRLPSKREVIAYCLQKTDKPFKVYCLSSKPLEIPHMPLKLHYDEKTGRLRLLAQKSFISDCLNAIERASSLTYPSPKLYLNQVNKALHQLYSVLAYTYNDKERVRAIRRKVKHMVVEALKRHGLKPKDAMLDYHRYVLKFSDVLRKKRKATKT
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