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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025381 Open in IMG/M |
| Scaffold ID | Ga0208871_1000067 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35827 |
| Total Scaffold Genes | 72 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 67 (93.06%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Crystal Bog, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021233 | Metagenome | 219 | Y |
| F027396 | Metagenome | 194 | Y |
| F029972 | Metagenome | 186 | Y |
| F037031 | Metagenome / Metatranscriptome | 168 | Y |
| F052345 | Metagenome | 142 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208871_100006717 | F029972 | GAG | VSKHTQKMSQRHEKDIEEEWPESHRTIGSGNKWEKGDLSTDESNNISFSIECKSTQRNSYVITKKIWNNIKSHAQNRSWLARPVLAIRFYGSTIEATEWGERENTADTLPVELDLVVLDKNDFLELYYDYRRLKENERGI |
| Ga0208871_100006730 | F021233 | GGA | MNSQSRFRRGLEGQPEPELDKPHDDKFGDLHRFVVRAFRWEAKPEEAEMLDAIEAVVEDFIQEYIDPAEVIIARFNSDSNISPSEADRLFLNLQSAIVAIESEVTRRYLKAQFSYYLLDDKYQNAYVKPSSGTSPDRNARARLDTRDDRYFYFVNYSAWRIINDKVNSLKATQKYIQNQLYRNSYGR |
| Ga0208871_100006731 | F027396 | GGA | MEDSAPKKRKSRVQEVVRGEMSWQILERLLNNYWEWREVLLTTGNAELHLPNGITVNIYDILEGIDKLPLRQRQAVVLSCLKNYKEVDVARMMGFTKWSAQVGSYKRKALKTIADKINEVNKIENRAINDK |
| Ga0208871_100006733 | F052345 | AGGA | MDRRTRSFKDLAKITPTTAELLSEEIDGEVFLYKYSPNCKICNTSDELKNIIDSLLLFPKTYKEVLQAIQPLQDKLDIPEKERINYDNIRNHQKNHLPFEKKLVRDIVERRAREKNRSILDTSERLLTAEAFYEVILAKGFEDLASGYGRPTLTQTMHAMEMLREIEKEGQDSYRPEDLINQLDVILLAIRETIPADLKEALFKKIEEYQNSGGNLGKNTVKKPTPELEYIDPDLEEES |
| Ga0208871_100006737 | F037031 | AGAAG | MTTDPNQLQGIRPEDVKVTPQQQAQINAYLAQQKREEEELGKEQPIELMESELMGVWKLLQELQYKYGNRKGSYHNLISLKNEADEKFAKLGFQVVVDWVMPGISVTPQPPTITIVGRVDGSEFNPEQNRYETGAGVADKYYEAKRKALGMSNKKLILPGM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |