NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208871_1000080

Scaffold Ga0208871_1000080


Overview

Basic Information
Taxon OID3300025381 Open in IMG/M
Scaffold IDGa0208871_1000080 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33754
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (85.45%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021233Metagenome219Y
F027396Metagenome194Y
F029972Metagenome186Y
F037028Metagenome168Y
F037031Metagenome / Metatranscriptome168Y
F052345Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0208871_100008021F037028AGGAGMTEKKSFDGNPANYDDDSYDEVVEVKVIESKEELVASIDLVNASPRDLLLYFSDRFKEKHGYTYNIEWVKETSIFKSFKERYGVDAGPMIALLFDKHGGKLNDLVMTATAFSKGSKWIQDTLYIELQQQKLKEQNRNSTEGLMNTDDFIERFAF
Ga0208871_100008038F029972AGGAMGLFQQKFSQRQERELEEQWPLAKRTVGSGNKWEKGDLSTQEQHMIEFVIEAKSTQAASFSITKKIWDTIKGHAQDRSWLARPILAIRLYGATEQPSTWGGTTSHTPDTLPVELDLICMDKDDFLELYYDYIRLKEKENE
Ga0208871_100008043F021233AGGAMSFSKGINRGLEGLTEPELGVGHDDKFGELHEFAVRAFTWKTKPEDLAMLDTIERVVDEFMREYIDPAEVIIARFNTDKSMNDDEADRLFLNLQSAITAIEEEVTRRYLKAQYSYYMLDDKYWNAWRKPTGGTQKDLEAVAKMETREDRQFYFVQYAAWRMINDKVQSLKATQRYIQQQIYRRS
Ga0208871_100008044F027396AGAAGMTEPAPKRKSRKQEVIQGKITWQVLERLLNHYWEWYEIYLTSGNPDLKLNNGVTVNIYDILKGIDRLPPRQKQAVVLSCLENRKEVEVARIMGFTKWSSQVGMYKRKALKTLCETVWKSEND
Ga0208871_100008046F052345AGGMDRRTREFKDLAKLTPTTQELLSEEIDGELYLYSSSPNCKICSTSDELKNIIDSLLLFPKTYREVLQAIEPIQDKLGIEGKERINYENIRNHQKKHLPFEKRLVREIVEKRAREKNRSILDAGDRLLTAEAFYEIIVAKGFEGIALGYDKPTLTQTMHAMDMLSKLEKEGQDDYRPEELVNQLDMILMAIREVLPDSMKEALFNRIEEYQNGTSKKAKKPRAIELEAEYIDEDLEDDL
Ga0208871_100008050F037031N/AMAITDPNQIGGIRPEDVKQTPEQIAQVNAYLAQQKAEEEALGKEQPIELMESELMGVWKLLQELQYKYGNRKGSFENLTSLRNEADEKFAALGFQVIVDWVMPGLMQANGQNRPEPPTITIVGRLDGSEYNPEQNRYETGMGVADDYYNAKRKALGMSNKKLILPGQ

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