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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025383 Open in IMG/M |
| Scaffold ID | Ga0208250_1000069 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36620 |
| Total Scaffold Genes | 65 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (75.38%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Crystal Bog, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F001991 | Metagenome / Metatranscriptome | 607 | Y |
| F008414 | Metagenome | 333 | Y |
| F017785 | Metagenome | 238 | Y |
| F024945 | Metagenome | 203 | Y |
| F086266 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208250_100006938 | F001991 | GGA | MALFSKNTITQVSGFDNPCIAGELVYGQKTFWNLVFSSNGAPVDLTGASIDAQIIRRNVSNLQDTRYGLSFDIADYVPEPAPVSLTITNRDDANGLFTLVIDETAWDVISTDPQLNISADNPVAFSGRIKVGFPAVGSNPAQDSIIFLLYLVRSDGVVN |
| Ga0208250_100006939 | F024945 | AGGA | MADLHDAIRALNSFVITIRGDIAYDKDEQVVQYDMAQAQAKLIELQTQEAQAEQAAKDAKASALDKLAKLGLTDAEINALIG |
| Ga0208250_100006941 | F008414 | N/A | MQSPQLPMKLMECMQHFTINKGIKMAQVIIFQNPNGGVSVCVPTGELPINEVLAKDCPAGAIIVDDSVLPTGSDAQFFDAWELADGKVTVNFAKAQAIKLAQYNSSAVNVAQKRQLNTLAGIENSVSDADFTAELTAGRTAISAAKTTAELVAIANPV |
| Ga0208250_100006946 | F086266 | N/A | MVRFANKFDFPVIHDLLRHFCRLHKFAILKDEATWSESHVNKQLSMVLAGAGFILIAEDGSGFLVALKAPCFFIENAFSLHEIIWHATNDKTSLRLFKRYIEIGEEMKKTGEIKEAHFSCFSESDFSRYGATKLQNTWKI |
| Ga0208250_100006947 | F017785 | N/A | MTTPITPIQNTNNIRYADFVRVVTPTATFRFSTAPTQMTIPAVDALPFDGLGVLVGIGKVQRDIKSTANQTTITLVGIDTALLGEVLGNNFKGAQITMWKGFFNPDGTLITSGGSGGLYQYFYGFINTFNIGEQWMEEVRMYVGTITVSAANIQMILQNRTVGRFTNDPSWQFFYPNDTSMNRVATISTVYYPFGKNG |
| Ga0208250_100006948 | F000934 | AGCAG | MANLTTILSIAEQVTINDQRFVGQTISRNQRISTSEIVTVVPFQFEMKPMNYLLYSQNRDLLANLRYFDKSMEQYLNFGSTGWENYINYRGDMTPTQVASCQWQTASANKVLVLGNLPSISSTAFIVKAGDFCQLDRYSYIATQDVLRGSGTTVNIPVHRTCLTTLVSPENAVIGQYGTTIAMGGNTYTGCTFPVILQQYPTYTLVPMTNDSFISWTGTFKAFESVL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |