NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208250_1017490

Scaffold Ga0208250_1017490


Overview

Basic Information
Taxon OID3300025383 Open in IMG/M
Scaffold IDGa0208250_1017490 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1243
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059640Metagenome / Metatranscriptome133Y
F064346Metagenome128Y
F094831Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0208250_10174901F059640AGGAMKSVYSYLGYEYCPWDDIEEDNIKTFHECFKDGVRIKMPEAFYCHTPYDLVPFEKFVGYVQTVEVFVQG
Ga0208250_10174904F064346AGGAMSKYRKADYQTIVRNMPIQEIDGLFETFQNSTTRTALETEIMNILEAEIERRIANWEVAY
Ga0208250_10174905F094831N/ARSELFIAGFADIYDMLGTNPELRMIPIGQLDHMRTRLKQLGYKFRVVFRGPHRKDRNTLKRNARAFNVYFEGR
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