Scaffold Ga0208740_1000470

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208740_1000470

Scaffold Ga0208740_1000470

Overview

Basic Information
Taxon OID	3300025391 Open in IMG/M
Scaffold ID	Ga0208740_1000470 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE08Jun09 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11370
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053029	Metagenome	141	Y
F071904	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208740_100047011	F071904	AGGAG	MTVDYSYVAAFDVRNAIWTELQNAGLLNSKDYMADGFNYPLVPIIPSQQVPEFNNLLPGKTYMTYDIIQKPVGPQWWISEETMVMQIISRSNSEILTIINFLTDLFRRYDLSALDVNSLAQSNNSPFKFFNFRIESANPVQPFIDEGGFMSGDFSFIYTYTRSVDQGPNNTGRYI
Ga0208740_10004708	F053029	AGGGGG	VQTINTNSQAKIYLQVYDNGVLSQADSLPTLSIFNADSDIYNPGGVLSQTPLYTNLSAFDELQTGMYSFTLTPNITEINLVLEVQWSYSLGGLDVTQTDFYGIETPYATIPETIDFLGYSPAETDSNYMDPSIIVKTEKMARTIIEGYTGIKFYRYYGGQEIYGIGANTIQLTEKMLSLDQIYENEILVFDNTQTPTYNTFGYNTEISPTGYQIRIWWPGWANGWDNQMDPTIYEYGRFRDRYLYRFVGEIGYKYVPEDIKLASMLLQQDILAKDYNWRNKYLSQVTLSEITLRMAAGAFNGTGNVMVDNILDQYRKANIVII

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