Scaffold Ga0209825

Basic Information
Taxon OID	3300025394 Open in IMG/M
Scaffold ID	Ga0209825_1000203 Open in IMG/M
Source Dataset Name	Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8B Hudson Canyon (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025394 Open in IMG/M

Scaffold ID

Ga0209825_1000203 Open in IMG/M

Source Dataset Name

Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8B Hudson Canyon (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	59166
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (81.13%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

59166

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (81.13%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Sampling Location
Location Name	Hudson Canyon
Coordinates	Lat. (^o)	39.29	Long. (^o)	-72.2	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hudson Canyon

Coordinates

Lat. (^o)

39.29

Long. (^o)

-72.2

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F055413	Metagenome	138	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209825_10002031	F055413	GAGG	MLNIKDLAVNKELDSKTMAGVRGGFNPFAILDSSTSLDSKVADVDQMFAFGLAQNNAAAVTNNQAINGGNGLTYAPVNQNLDQYSDMNVSGIGNVSVS
Ga0209825_10002032	F055413	GAGG	MLKVTDLTVNKALDSKTMASVRGGFDPFAILINGSTSLNNKVADVDQIFQLALSQTNAGEVTNNQAINGGNGIVYAPVDQNLSQSNWMDVSGLGNVSVS
Ga0209825_10002033	F055413	GAGG	MLNIKDLAVNKDLDSKTMASVKGGFDPFAILIDGSTSLNNKVADVDQIFSLGLAQNNAAAVTNNQAINGGNGIVYAPVNQTLTQGSAMSVYDIGNIKVS
Ga0209825_10002034	F055413	GAGG	MLKVTDLTVNKELDSKTMASVQGGFDPFAILIDGSTSLNSKVADVDQIFSFGLAQNNAAAVTNNQAINGGNGLTYAPVNQNLDQYSDMNVSGIGNVSVS
Ga0209825_10002036	F055413	GAGG	MLNIKDLAVNKELDSKSMAGVRGGFNPFAILDSSTSLDSKVADVDQMFAFGFAQNNAAAVTNNQAINGGNGLTYAPVNQNLDQYSDMNVSGIGNVSVS
Ga0209825_10002037	F055413	GAGG	MLKVTDLAVNKELDIKTMASVRGGFDPFAILIDGSTSLNNKVADVDQVFAFGLAQNNAAAVTNNQAINGGNGLTYAPVNQNLDQYSDMNVSGIGNVSVS
Ga0209825_10002039	F055413	GAGG	MLKMTDLSTSKTLDHKTMTRVRGGFDPFAILVDGSTSLNNKVADVDQVFAFGFAQNNASAVTNNQAISGGNGLSAAPVDQYLDQYSNMNVSDIGNVSVS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209825_1000203

Overview

Ecosystem & Geography

Associated Families

Sequences