NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208876_1000842

Scaffold Ga0208876_1000842


Overview

Basic Information
Taxon OID3300025402 Open in IMG/M
Scaffold IDGa0208876_1000842 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH03Jun09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8169
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037028Metagenome168Y
F053744Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0208876_10008424F037028GAGGVELQEKSFDGPLGNYDNDDYDQVIESQAPASKEELVKELDLSKSDARELLLYFCSRFKETQGYEYNVEWVKETSILKSFKERYGVDAGPMIKLLFDKHKGKINDQVMTLTAFSKGSKWIQDTLYIELQQDKIKEEKRPSSEGLMSTDDFMARFTK
Ga0208876_10008429F053744AGGMSEASKKPKRIIPLRDNELLFTTAMAACFFDTSSENFKAKEKYFIDASGNPIEISRTAGGDRRYSLNDILKIAHALRRANKMTDRQLRLIVLRVDAFKEPVKKHRLKYRKGNNPS
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