NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208381_1003829

Scaffold Ga0208381_1003829


Overview

Basic Information
Taxon OID3300025405 Open in IMG/M
Scaffold IDGa0208381_1003829 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE13Jul09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3366
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020158Metagenome / Metatranscriptome225N
F048949Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0208381_10038291F020158N/AVPECAVIVKLVNSTRHEFQIVPVKCPAPKDYWLASSQMVYFESSDLIEVTRQKDVVIGSLVKFVIPSEAEVRRFTRGVRGRTASGRKPTGYSQFHMLLVGLRSLYDRTSKLWRESIYGIDPPSVEDEYDEYVAQLKKEPELRRLRDETIEHWAALAAKDLGEAEAPDAYENYQRMDDYTWESVQVPMF
Ga0208381_10038294F048949AGGMPALRQNPGSAPRSEVPYLDPTVSFSNPVEYWVPFPWGTVDSGITNTCAFDSFLAHLVWMHRRDPTYFVRNLNLVNSRAEQAVKAIVNLYWRQLPVPSAENLSTRAHFIWRNMLLQDRSQQRPLYGLQTDPATGKTFVNMAGGHSTSVLTPLSDSSLMWFVHSCDCRESADPSSRFSQVVAADIWKVTSGIYETPKSKLKCKACQEPFDSRHRPLVAPSTWFVHFPVWDGQNARPPFELSDLPTIMYLPELRTGNEITFQLGYVGYATSGTPRNPLTHATSVHYIGRDYYWYDGMVDSGTLHLMEDAYQEAPAHMGDPEYVVYFRL
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