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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025406 Open in IMG/M |
| Scaffold ID | Ga0208035_1000034 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 50943 |
| Total Scaffold Genes | 48 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (89.58%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | .1 to .2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002998 | Metagenome / Metatranscriptome | 514 | Y |
| F004581 | Metagenome | 432 | Y |
| F010440 | Metagenome | 303 | Y |
| F012741 | Metagenome | 277 | Y |
| F014350 | Metagenome / Metatranscriptome | 263 | N |
| F069592 | Metagenome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208035_100003414 | F069592 | AGG | VNDKYTDHAVLSPLFAQNLVQRLEQLNIVDQFTDASNLALPFAPFQLFQISFSVASSNELPALLGGRSLPRSSRAASSATHPSGKETPQRPHSD |
| Ga0208035_100003415 | F012741 | AGGAGG | MFTPQSKNLLGVLSLTNSAGGIFQSLKRQTAAAGFTAYCGIISVALGLWMWLWRDTTLQDKTLTRTVGAALVLSSFFFYQHLRRGFGAFFLILTSTGIGIAVHYSNHPMINGDRPEILAIALIAIGLIAYFVQTRYLPGFLFLLASSVTIIGILWSYPAIFCPIVMVITGGVLIFLGILIRSLAMFNSFM |
| Ga0208035_100003420 | F004581 | GGAGG | MQHAEVYNGHARRFQQMARHIELSMTPQHQQKHGGPDPISTNDITLATTLMNSVYGYPAGKQSVLALSAGLLPGEERSQTVRGLFRMTAACSEYDQTLTYTLLPLPGREIETANLLKTTAAYSIERAGAHSRQIPPSTRHPVQLER |
| Ga0208035_100003421 | F014350 | N/A | MATQVNPLEEHAAGAKAGRRGSKAKEKQAEYTAPADTDFPYAGQEADPQQELDTLENQADAPVRGSYLREKDGYDTLSPEQKAVCDKDFESFLDRLTRPIEAKDGESRQDAILRAKKEYCAARQEHTAHHREMAKTMLASKINCLNSEYPRNSFSLKNPDVAKEFLATAFYHNAATAKGLTAFDKDVFAASKKAALREFSVLAASVETGGSATKEFNNTFALSIERPPIGAPSQNLRIAAEPLPEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRAARTKTTQELER |
| Ga0208035_10000343 | F010440 | AGG | MTVAEAEEKLETLTRNLATSEISLSQRQRYEIQAARCHRFIQRARQKAHRSLASFAETLLGMAADTVFDQNQNAALITAAHLIRCASIEQLAIAVPAAIRETPTDSTRPAGFKCREFTETAECLLGMDNSTFSCECNVAIRTALQLGNIVGLHQIHQSVRRAQADSSELGPKGIVNRLTEICSAYHPKKPASTPRLPDSQNATSLNTAPVSEGHL |
| Ga0208035_100003437 | F002998 | GAGG | MSVSVNRVWRHLSDETRVAACKLIWAESTGASKQVLIAALAKEKKLREVFVRKSPIERLVNWTATTMTLPDPIVEEMLKKYLLHEHRAVIISFLELLQIPHSEGMIEENFDYASLTNECVQEAARSLLASADRMGAELYLKYLVLQGGPWEGIEEILPTGE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |