NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208035_1000036

Scaffold Ga0208035_1000036


Overview

Basic Information
Taxon OID3300025406 Open in IMG/M
Scaffold IDGa0208035_1000036 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50448
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (93.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y
F017951Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
Ga0208035_100003613F017951GGAGMAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDASGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILARADVRASLSIQPHANSFFSAKGKTMADYYEFLLHNSPRGTVANTVGKLREIAAESIQ
Ga0208035_100003614F004301GGAGMTAMQFSLFDARSADATVGGEPSVNARNAKRQLDTLRKQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVMRWIRHLIFTLNAERRDVLSAIADLEPKVAALSQIIGNAIQ
Ga0208035_100003615F003764GAGMQIQLDSPYVQDENPAALLAGAEIEAAGLHRCLKIVRLWSQSSALPRPRREEIIEEEQRLANLYAAILFEIGSAFSIEQADELKVRIESACILDDWECPPAEQRLLFPIPNDSVTEANPATARK
Ga0208035_100003617F003942GGAGMLGHRLNPTIHRYEDVELIEVHSEYLECSFMIAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPEGTTAQPGMAEAIEIQRQSEHTIYAENLSAMLYGTGPNPARS
Ga0208035_100003618F003389AGGMQITVWSVAADDDNGTYASVHETESAAYRRLIQLTVDADNKDNVAKAEAFMEAEDFDSLDEWIHEEVIEPLSTYSVDQQTLDLSALPAPAPTANERALSRRELASVLHGLRLMQEQWEPKMHGCTSIGLHDPLELSEPNACDHFCDEEDSPLGPGEIDELCERLNTGFCN
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