NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208935_1001942

Scaffold Ga0208935_1001942


Overview

Basic Information
Taxon OID3300025414 Open in IMG/M
Scaffold IDGa0208935_1001942 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3328
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012246Metagenome / Metatranscriptome282Y
F013208Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0208935_10019421F012246N/ALSISLIATGCSAQWISIALADLPALTQMALNLGTIITTLESGQQINPTEAASIQNISAQASKDLNLLATLYNQYKANPSTGTLQKIQSAIADINQSLPALLQAAHISDPVLSVRVTAGVNLILTTVASFATLIPQTAASSAAQPAARETTRQQVGIPTVSDLKKQWNLQVCGPTNNSALNFGAGCTVR
Ga0208935_10019423F013208GGAGMDGSIRERVEVLRREIAEIQKLNLAYLQTPKTVFGAEQDHTRREQRLREIMDELKSMTDWKKT
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Institute for Fundamental Biomedical Research
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