NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208935_1008038

Scaffold Ga0208935_1008038


Overview

Basic Information
Taxon OID3300025414 Open in IMG/M
Scaffold IDGa0208935_1008038 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1468
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002408Metagenome / Metatranscriptome562Y
F036729Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0208935_10080381F036729GAGGMIQHSENSRREMTNAEAGVVGAVLGFGLIALLLYLAVDRYHIRKEQLVEAGLYLFVIAAAIIAPV
Ga0208935_10080384F002408N/AQPQPQAQVTKPKPPEPVAVVSTVPSEMLLSSTPVRLVGGAAASKANLGVLIRDVYRRQDEVFVRYSIENHSTQTLRAGAPAVVSLTGLKFDRSLWTFQNAQLGMEYESRLKTYDAPIPVKIRQCDPGVAEVGPGGTRIGLIALQLPAVNPDAKKTQPTVLKILFPIDRSGNLTATLVL

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