NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208253_1007798

Scaffold Ga0208253_1007798


Overview

Basic Information
Taxon OID3300025418 Open in IMG/M
Scaffold IDGa0208253_1007798 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Oct08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2616
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021219Metagenome219N
F091105Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208253_10077982F021219N/AMLRDEMKTDPTLDVTPVNVTIGSTWVDACATPFNKSVIEIVNRKGNYVQFKYTILNNRPWDTENTYSCSLDTFHVGWIHPDSEKAKANEMGLSLEDYRAFVAEQEIEELEWQRYLREKRGHDKYYEEAPV
Ga0208253_10077985F091105AGGAMIQQTGTLGHITAISPTGDSFESQYGTMYVHNIEFASGTKGTCNSKTPLPKYKVGDSVYFTSSPDKVTKANKIKILGTETFHAKAGIRAENYKQAEQIGFTSASKPAYNPDGAALGNAKNIAKDIVIHNARVQNVILKPDELENGDFQEFVRIVLKTQ
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