NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208111_1031867

Scaffold Ga0208111_1031867


Overview

Basic Information
Taxon OID3300025420 Open in IMG/M
Scaffold IDGa0208111_1031867 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Aug08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)883
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060487Metagenome132N
F071820Metagenome121N
F094802Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0208111_10318671F094802N/AKHGKENYFLRGNHDERLYHLATNTTGLVRDYAQDGIRSLEQNVKKWRARMLPYDSAHGILQLGRLKVLHGYFAGNNAAQQHARVYGNCLFGHTHSIEVNAVASLDPSEARGIGCLCIRDMDYVSSKTGKLRWAQGWAYGFLFPDGTYQLFQARKINNKFHVATEIKSY
Ga0208111_10318672F071820N/AMSQQRSKATSWASLLQDEIKATEKKPVGKGWKTAKELQREFKVGERKLYEILAKLSREKRIERFSGFIINDSGQKATRAWYRVKRSA
Ga0208111_10318673F060487N/AKTPKSRIKELEAQVKHLEMIVASRELDVEILEEQINTMEHNKFVNRVKRFFLRDTTL

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