NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208646_1001641

Scaffold Ga0208646_1001641


Overview

Basic Information
Taxon OID3300025425 Open in IMG/M
Scaffold IDGa0208646_1001641 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10405
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009146Metagenome / Metatranscriptome322Y

Sequences

Protein IDFamilyRBSSequence
Ga0208646_10016416F009146N/AMKLVLNWKRMYMKKIEAIIISKSTIRLVKMDEHKALFERITKKLDEEVNEEFIKSTKTENGNTQISERVVIEKIREVLVSLELSFEEAGSQQSKDFRNVGGIGLNLEIKKTDNTVIYFNDTCPSKDIYYVIFFTGKEYKRTPDKNILPRLLYINGHEFVKDSPWIATYIDELTALKDKYARGVNKKNLAGIMEVYPRPTFKANIARFLGMNLPLPHLETALNEDDLAAAHTLMTLSSGVV
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