NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208739_1021539

Scaffold Ga0208739_1021539


Overview

Basic Information
Taxon OID3300025426 Open in IMG/M
Scaffold IDGa0208739_1021539 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1145
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013610Metagenome / Metatranscriptome269N
F018161Metagenome / Metatranscriptome236N

Sequences

Protein IDFamilyRBSSequence
Ga0208739_10215391F018161N/AMSELESKPDYSARQQVVRKIYKVLSRINCIPPFEDTINFRHLQRLHELMRELKSLDPEYPVTDVVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSEEGKPFPALNSKNHNGN
Ga0208739_10215392F013610N/AMETSTNTDNPEKKQKIEKQKKLVADLFSTLNLVFTQTKLGIEKSDLLLRAIHQFKTDILRIDPYWKLISWPHITIGRIFCSIDAIVTGDKWDCETNKFLFNEIKDSMMKLRRFNNYWQLTEEDAITYTGQVSAGDKTRGYRDTLEEL
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