NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208500_1008959

Scaffold Ga0208500_1008959


Overview

Basic Information
Taxon OID3300025429 Open in IMG/M
Scaffold IDGa0208500_1008959 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE17Sep08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1556
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054566Metagenome / Metatranscriptome139N
F055421Metagenome / Metatranscriptome138N
F062460Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0208500_10089591F062460N/AMNLEKSIIEAVTTAVREIRQESCIEKQVKSLMKIYDAIIVKDNEISTESSLKTTRKRKRSISYE
Ga0208500_10089594F055421N/AMEEFTNPYKETNIEVHLVWIAIVTAANYIPMEGIVGKCIRSYLALVVWLLIILNRKRSLWQRGAILIIYLKLNSMARIIENLSYSMTVIKIGMLGVSLEQIICNNIIESVKMVILLHFMTVAICLPSGEEIESNLIKLTIGY
Ga0208500_10089595F054566AGGMEKEKNKAELTLDKLRLLRVKNTQEKQAISYIILDEDIEPILRQSLVCNVRLLETIDHLLGLLEGIGTIITKEKPIKVKQTNKDAN

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