Basic Information | |
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Taxon OID | 3300025429 Open in IMG/M |
Scaffold ID | Ga0208500_1008959 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE17Sep08 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1556 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F054566 | Metagenome / Metatranscriptome | 139 | N |
F055421 | Metagenome / Metatranscriptome | 138 | N |
F062460 | Metagenome / Metatranscriptome | 130 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208500_10089591 | F062460 | N/A | MNLEKSIIEAVTTAVREIRQESCIEKQVKSLMKIYDAIIVKDNEISTESSLKTTRKRKRSISYE |
Ga0208500_10089594 | F055421 | N/A | MEEFTNPYKETNIEVHLVWIAIVTAANYIPMEGIVGKCIRSYLALVVWLLIILNRKRSLWQRGAILIIYLKLNSMARIIENLSYSMTVIKIGMLGVSLEQIICNNIIESVKMVILLHFMTVAICLPSGEEIESNLIKLTIGY |
Ga0208500_10089595 | F054566 | AGG | MEKEKNKAELTLDKLRLLRVKNTQEKQAISYIILDEDIEPILRQSLVCNVRLLETIDHLLGLLEGIGTIITKEKPIKVKQTNKDAN |
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