NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208821_1000242

Scaffold Ga0208821_1000242


Overview

Basic Information
Taxon OID3300025432 Open in IMG/M
Scaffold IDGa0208821_1000242 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46624
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (85.37%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089204Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0208821_10002422F089204AGGAGMYLTENPEDRISIVQMNSELQRAQLELISAHCATHQLRLRFSTENLAHYGRRDVLRKSIETASALSDYYSSIEQQIPAEEAVSAPAAGLNENHTLQAIECVSSYLREQRERYLPLAAPLSKQHQARMCPYFSAALLYQVKVVERHGARIPNPPFYAEAKALGFVSLPDIPHMNSLTFLDVLVFNEGLMERSLFHALVHAVQSQVLGLERYTELFVRSFVNTRYHFLVPLEAHAFFLESKFALPVVEKFSVEDQVRLWAEQNRY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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