Scaffold Ga0208821_1019979

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208821_1019979

Scaffold Ga0208821_1019979

Overview

Basic Information
Taxon OID	3300025432 Open in IMG/M
Scaffold ID	Ga0208821_1019979 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1475
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)		Depth (m)	.4 to .5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022164	Metagenome	215	Y
F051022	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208821_10199791	F051022	AGGAG	MEIEQTPGIVFKFCRPSGSPCRQPSAAMAQALRQFARSDEMQAFVANARKQRRKVVVEVFHASDGHPLLIHTAFLPNKTA
Ga0208821_10199793	F022164	N/A	MDSEETNHNEPIVESLIDLQRRLLKSKNPFVRRIGTLLAAGALDNHLSEINDHRIGQLLLDEVGGDLGIFEPEAIICHQATRRLFRSEHGGLVEEPPLRPPCPVCGNDMLFRYGVDEPDFFECSSLRCEHREYAGSDEP

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