NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208821_1037951

Scaffold Ga0208821_1037951


Overview

Basic Information
Taxon OID3300025432 Open in IMG/M
Scaffold IDGa0208821_1037951 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)932
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F038518Metagenome165N

Sequences

Protein IDFamilyRBSSequence
Ga0208821_10379512F003764GGAGVSTAMQIQDDSTYVLDENPAALLAGAEIEAAAICRCFKIVRFWSQSSALSRSRRDEMIEEEQRIANLYAAKLFEIGCAFGIETADELKVRIEAACILDPWECPPAEQGLLFPIPTDSATAASPATARK
Ga0208821_10379513F038518N/AHQQASGEGKIDANWWDAAMRFGMLDLDEEPAYRLGSYPVKVMRWIRHLIFTLHAERRDVQLAIAELEPKVAALSEIIGDAIK
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