NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208690_1018646

Scaffold Ga0208690_1018646


Overview

Basic Information
Taxon OID3300025434 Open in IMG/M
Scaffold IDGa0208690_1018646 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1225
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055897Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0208690_10186461F055897AGGMLKSFGPFFSRVATALIGVCIASAFAADPGKPHYVVTNDDVPPQNETSVTFYTVSADGQLTMKEKVPTGGIGIAGGYFAANRVNVLDSGDAKCVYASQATSGDIVGIVVRTLTVGGSARGSTKDGGRSNGIGLAMNAQYLYASFTDSNTIGTFHVLPGCKIKFIADLKVVGLQGGVIDGMTLHGNMLVVTYGDGSIESFDISGGVPVSNGDEQNSTGSHGGNTYPSAVDITQDGHYAIFGDTSPLTVIEVSDISSGKLTPTVVYRLGSGINSSNILLSPDETLLYISNNQGDTITAAFFDKSTGKLSKGCTSNGLKGYVKDWSYLGALALEETTGTGGVVYV

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