NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208770_1006033

Scaffold Ga0208770_1006033


Overview

Basic Information
Taxon OID3300025438 Open in IMG/M
Scaffold IDGa0208770_1006033 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK9 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4309
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008190Metagenome / Metatranscriptome337Y
F018962Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0208770_10060335F018962N/AMVKIVLKSARNGVIKKVIDDNYGGGNEHFTSTDVYESLEDAKSNEKTYIKRFFFDLCDDLGLEIGSKFDKAVLDINIVWGSHYEPTVKDIEVKIKRLKIELEELEEWKNI
Ga0208770_10060336F008190GAGGMEEHIEFNFIYSDDALRVKTFLGNVPRSIECINYMDIFNKLTKNDYYQFEPSDAVVSSYLMRQLQNAIGRNISNTIFYVLGNLNKETVCGIQDYVESLSDKPITYKIYHSPDIMVNGTAELFDDIIEFE
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