NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208034_1011454

Scaffold Ga0208034_1011454


Overview

Basic Information
Taxon OID3300025442 Open in IMG/M
Scaffold IDGa0208034_1011454 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2922
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1 to 1.25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006757Metagenome / Metatranscriptome365Y
F050089Metagenome145Y
F073812Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0208034_10114541F006757N/AMKTLAVLPPIKSHLRAALLNIAAYKEIPTLQLIAAARALPGGTKVHCPDRLTAIVLLLGTRLVELN
Ga0208034_10114542F073812GGAGMTEPRQELESALLPLAWILNFIWGTIQLMFWFFMFPILIVCWCFYHPVEARLYIVSAIPLLWNGNWGTRGLLVFFVLLIASLFGKTMHRICWGIVKLALVAGLIWYIYMIFKLA
Ga0208034_10114543F050089AGGAMARQVFVFDAPPGREMCDFCSASPTARLYACRNFIVPRTKHAVFQHESIGAWAACDRCALLIDAGRWSQLTDRAFRRFCKKHGVSRYEELEVREQLREIHQLFKEHMIEEV
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