Basic Information | |
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Taxon OID | 3300025445 Open in IMG/M |
Scaffold ID | Ga0208424_1000004 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 39484 |
Total Scaffold Genes | 58 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 54 (93.10%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001599 | Metagenome / Metatranscriptome | 665 | Y |
F001706 | Metagenome / Metatranscriptome | 648 | Y |
F002301 | Metagenome / Metatranscriptome | 573 | Y |
F084182 | Metagenome / Metatranscriptome | 112 | Y |
F088554 | Metagenome | 109 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208424_100000413 | F001599 | AGTAGG | MAEETVSLVWCDNGMVDGKFAQGIADVLLKSGVKFETTLRSHGNQIARQREESINYWYENNKSDWLFWVDSDVVVSPEVFLRLWNKKDALTKPLLTGVYFTTNNPEEPLMIPLPTVFKFVDNDEGFALERIHPLPKDALIKVDAAGMGLVLMHRSVVERIRKVVPDATMFQELGTGKKFIGEDIFFFALCNQAEVPLWCDTGATAPHMKRFSFDEHYYNAMTKGR |
Ga0208424_100000420 | F001706 | N/A | MKHWEHHPEYVEGCFGCKASTLQMNPGDAKRDIPDKKWNAELQAYRDARAQGIQPSGTRMKDIQEAHQASEVLGKPYNADSMPKAKQITKGVAEVMKEIGK |
Ga0208424_100000437 | F084182 | AGGAG | MRDQDIMSNITEISKWLDSLIVEVNRINEVVEDLIAGAPISVEAWSE |
Ga0208424_100000452 | F002301 | N/A | MVEVPDIQQVLWLWFVTHPLKLTEWSALDIKDREKLIAKSLRNAAIKHCEREKARTVGYELLDLYYYDASVIEAFLPSIISESYEIPSKIKDLNYKFSKSEGSSDGNNWLVLRSDIANAFYKLTEAKQNVLRIRFSTDSAEWSLIAKDLKTTPDGARMKVQRAINSLIRNLGGWRPYTDEDVQQQEQDDESE |
Ga0208424_100000454 | F088554 | GAGG | MTEKFSPYKAALRRKKIAEAKKLKAIKYIKDMNKKANKDANV |
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