Scaffold Ga0208424

Basic Information
Taxon OID	3300025445 Open in IMG/M
Scaffold ID	Ga0208424_1000016 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208424_1000016 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29734
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (94.74%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

29734

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (94.74%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009140	Metagenome / Metatranscriptome	322	Y
F011742	Metagenome	287	N
F020138	Metagenome	225	Y
F033724	Metagenome / Metatranscriptome	176	Y
F034503	Metagenome	174	Y
F040534	Metagenome / Metatranscriptome	161	N
F046258	Metagenome	151	Y
F097199	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208424_100001610	F009140	AGGA	MRLNLTHKTLLKRLTDGPRAMFELTHSNTNDNAVSFHYAKYLPELERFGYVIFHDDKWHLTQYGRMEMNRAVSGAAMRIENGSVREKYDGRELRRSVFRAGCYDFLNHPSRFGDNLVYHKGKI
Ga0208424_100001613	F046258	GAGG	MKLLTIAMRQVLSLLETVIGPPNVPTLQREITPGRKTLPSTLITDPKFVYQSAACTDITQTFEKAKNERLQRLLNDANGNRKQNESTEQQVSKQKLRRVHG
Ga0208424_100001617	F020138	AGG	MNQQQTNRLEAFWQDVEAHKALNPSMPEQALVILKSVALDALLAAQDIELIGVNDENN
Ga0208424_100001618	F011742	AGGAG	MRTIDFVPFEWDDPDFNPEIDRIEVDYEWHEGDLSVGLLSYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEINENDKKAFNDD
Ga0208424_100001628	F033724	GAG	MPRPQSELTSVSKTVSARLAPAHYAEWKRLGGIEWLRQYLSQSIKNREQQKPR
Ga0208424_10000163	F097199	AGGA	MSEALNRVIEEQQKRIDDLLEGNKKLIERSARVFKQNEELFEAVAKLIDFRMDYDKWEDKQREAYGSLRHGVRMQMIEAGYCVTCYNFMAHCECDYE
Ga0208424_10000164	F034503	AGGA	MNKNEAHQLLDKRKQGLAVPQYLVNRALVVSGDISMACPPCQTARMEGSGMAQGEGVRGLPYPLMAWDNPGFNQRNEGTQ
Ga0208424_10000168	F040534	AGGAG	MNTDKSGAGRIVGLSTLGEPMSEEDFEKKMDRGELDYEYAEYLMDHRSVGNGEILIRLMERNELYDDFKDHMTRGKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208424_1000016

Overview

Ecosystem & Geography

Associated Families

Sequences