Basic Information | |
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Taxon OID | 3300025445 Open in IMG/M |
Scaffold ID | Ga0208424_1000076 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12707 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (93.10%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001515 | Metagenome / Metatranscriptome | 679 | Y |
F002827 | Metagenome / Metatranscriptome | 527 | Y |
F005146 | Metagenome / Metatranscriptome | 410 | Y |
F016263 | Metagenome / Metatranscriptome | 248 | Y |
F088554 | Metagenome | 109 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208424_100007611 | F005146 | GGAGG | MKLVNFYEVMDRRGDIAWGGASVTEAVEWFRRGLDNSIFVSVWNEEDIEEPVLVTDKIEITALVLATITSERARA |
Ga0208424_100007614 | F001515 | GAG | MTTKSSFDLDFSYGRKGEQLVEDLLTEGKRIEVKRDRKWHLTNNVYIEVECFFTKDNKWAPSGLAVTEAEYWAFVLKKTVLMLPTTVLWYAVKTFGKDITCQIPPNLSRGYLVKVVDLIEATKQLPMEEA |
Ga0208424_100007616 | F088554 | GAGG | MTEKYSWYKSALRRKKIAEAKKLKAARYVEEMNKRANEQQPTTPRVL |
Ga0208424_10000767 | F016263 | AGGCGG | MPRCGSCGWQFSERTLTKHAETPCGEESEKAGAMPYVPEVDDLVRMIEEEAGEDV |
Ga0208424_10000769 | F002827 | AGGAGG | MNKEYYQAKADLCRDLAIKQMVEGEHGEAGKNLLRMVNALNELNLINYKEEKDNAGL |
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