Scaffold Ga0208424

Basic Information
Taxon OID	3300025445 Open in IMG/M
Scaffold ID	Ga0208424_1000078 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208424_1000078 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12065
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

12065

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F005087	Metagenome / Metatranscriptome	412	Y
F012214	Metagenome	282	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208424_100007810	F000857	GGAG	MELNLNNEEAKVNEDYYTGGVLAGGLEGALIKNDKMFNEVKSGTWSQTFNTPNINYKVGAIDGERYVQYEQKNVESVRQYCKDRREFYKMIGTTDNPLFAGTFEAMNLPKCFAHEISSKWFNNRPWELIKMDKKDKILFYAIVNQYYSDFVCHPSGKIPLPYNPIVPTK
Ga0208424_10000784	F012214	GGA	MSDYTRLRTPFTNMSFTPDVPSNALGPNEYNLGKNIEADVRSIKKIFGEKEIASTITDTPIFMEGGFRSETSWVYIVATRNSSNQGKWWMITATGISNITPGVGANPSVYLSGYTEDLNITFSWVGNVFFMNDTISNPMYFLPTSNEITVTPDASWNYDVGVTSTRAGFVRNYCSPNVGNILIAGNLTKDIGGTLYNYPTTVRWSQAFANQGYPATWEPTLSNVANEQEVPVRGPLIDGFFLGGNFYVCSYWDTVVFSPISYQNSTAPIFGVRLLNQGRGLFNNNCWTNTDANVYGIDARDIWVFNGSEFSSLGNQKVKDYFFANLNPLYSQRMFMVNNTQKYQIEIYYPDLTSTGWCNKMLSYRYDLQVWNAPKDIANAVMGTEGPRWVDSSPDYFNLSSRAVVYARALSSSKLIETNIGNSFINSGAIDSQFERTNIALQTANGPVPYSSKVYIHRILPEMAGTGKIDVTIGGANSTQQTPTYGQTGSVIIDTDNPWVTTQQNSVRTVAVKFGSNDATDTWKVSALNLQATVTEDAF
Ga0208424_10000789	F005087	AGGA	MALFIQSGNALVTRVAQWVGAIPASIGINATAFNSSTGVLTAASSVDGIILPGDFIGPSTLKSYTTVLAVSGTSITVSDIESVWAGTTYPTAILKLPTQSTSEIMSSIQLCELKMRTIELPALRSNPYGDTPAVLVTDAQGMAPIPADMNKPILFFQETPNSSVPPGTPAASMGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGQRYVFTPNPGENVNIKAYYQRTFPFLFGPTDDPLNPIVQNNAALASFPEGYMYGTLWAYYDKNKNNEEAQKWSARYEDAYGLIEDQNFKGKWLGGDQHLTSEFQPRNYRYSFK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208424_1000078

Overview

Ecosystem & Geography

Associated Families

Sequences