Scaffold Ga0208424

Basic Information
Taxon OID	3300025445 Open in IMG/M
Scaffold ID	Ga0208424_1000160 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208424_1000160 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8462
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8462

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (92.31%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F027490	Metagenome / Metatranscriptome	194	Y
F098944	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208424_100016012	F098944	AGG	MFDEIRPEGSTVNSEEQKQKARDYAKAKRAQNKAMKLATGQIEPKEAPEQPKDEYDFTNFTPRSQKAPGRPKSIVNKVTEYGALFNKLNDERIANGMPPLKTAMEVLIDAMQSDHLDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDADDALNEFLDSLRKV
Ga0208424_100016013	F001915	AGGA	MEWTLAHPLHDVDDIVEMADSVFGSEADGILTRDKAVFRKHVTVATTVQVFDKSKEFIAVCRGDKWVKTYMGEAAEDTLLAYCWFDRGGYTTYANEEISNAKFHHLDLQLPVRLRVRLINEMIDQHILWANRWGIPVVCSTSIRAEHDGFMKIHKKRGFTVNGSYAWIRTEKGMECLTK
Ga0208424_10001604	F004695	AGGA	MLDKQNVIVESLESPTGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEADGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRNPITQYKEVEGTRDQLRVFETLAGEKGLTAKRQDMRKIDVDLQGAMQEAMMPDESEAMQEPSGDELQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHECKTQFPFVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLGYVESAMARFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDYNIQQLAATCLKGAPFMDALSVENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMQVPPEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTLEEAAKIMQAQAAKGPSAEQQETQSKVALNNAKAQESGSVTALNMKKAEDIDTDNMFEALAAKRGKLSAVEID
Ga0208424_10001606	F006264	N/A	MEDPSKIFQNRLSSQAEACARKTLEWLQKDLQGGQKLEPDEIYYLAYAAQILLDIRDNYGKK
Ga0208424_10001607	F001059	AGGA	MATYDIDALKVDLPSAKELAQFVYDKTDGLVSLDLIGKPKEEQYIVAKNALEGKKVPSEYLTGFNPYVEKKDVIPEDPLRKLPKRSIDLPDEESQVHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITYQITGPVEKIPVGEKLNKYGQTVPEKYSWIDPRTEEKVLRNPDGTFTKEGRGIHTFLIGEKGGGVWTLIDRDIVSISQKNIADPWA
Ga0208424_10001609	F027490	GAG	MYGKVINGGAQMRKGLTKGINDKLASRSAEDDRRATVATAVNNAYKVNTISSQHTNGTKGGSFVKPSNRSKDIPV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208424_1000160

Overview

Ecosystem & Geography

Associated Families

Sequences