Basic Information | |
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Taxon OID | 3300025451 Open in IMG/M |
Scaffold ID | Ga0208426_1000005 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 73670 |
Total Scaffold Genes | 152 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 114 (75.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F003826 | Metagenome / Metatranscriptome | 466 | Y |
F008244 | Metagenome / Metatranscriptome | 336 | Y |
F018683 | Metagenome / Metatranscriptome | 233 | Y |
F024289 | Metagenome / Metatranscriptome | 206 | Y |
F066582 | Metagenome | 126 | Y |
F074569 | Metagenome / Metatranscriptome | 119 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208426_1000005131 | F008244 | AGGAG | MFNASSHAFIDGVSDFKLKFVDQAVKHDGIKNALNGFVEAQRKYTKTAADAGMQSMMALGMIFSSKTFYDDVSEQIKTLVPATDLFKTTKAKAKKAV |
Ga0208426_100000561 | F003826 | AGAAGG | MLDPITIGLAFTAAQSAVSHIKQAIALGKDINSLAGQFNTFFDSADSVHRARTEAKVKAALLGKTDAELGKEALQIAMHSNSLREAERELKDMIIWQLGKPQIWEDMIKERNRLFKERAQARREEEERQLEHKKKMANQFMIAMYFIGFSIVAFCTIMAGVGIYGAIEDKRIYEEKVEARRQSVYRQHQARLAEDKKALADYAKN |
Ga0208426_100000580 | F074569 | GGCGG | MNNSITEQLLALAYLKEDEVYDSSERDEFDCLIALIEDGTIDTFEELAKYGVEE |
Ga0208426_100000582 | F018683 | AGGA | MLVIKRFKQTQKFRVIVGPACFYSTAKQIRNNVGDFYKCNAATQKALDALEFTRSGDGIADQCACGIAGTWEDLAIQLTMA |
Ga0208426_100000583 | F024289 | AGGA | MQALTERQKTLIVNNVVKAVKNIDNLNKTGYNFLYLCSGFIAHYDMYGFISNYSDGTLEQDILSYAGQNQWKNFRPGERDYEYYMAKADVYNRILAEIA |
Ga0208426_100000590 | F066582 | GGA | MTTQHYNRLENGPMDEIDAAIWSGDLFHNRANIAEFREQMARWERGLQSCEDILSEVPERSNDGK |
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