Scaffold Ga0208850_1000038

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208850_1000038

Scaffold Ga0208850_1000038

Overview

Basic Information
Taxon OID	3300025457 Open in IMG/M
Scaffold ID	Ga0208850_1000038 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	55391
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (65.45%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow Environmental Observatory site, Barrow, Alaska
Coordinates	Lat. (^o)	71.2999	Long. (^o)	-156.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037998	Metagenome	167	Y
F071798	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208850_10000386	F037998	GGA	MIYGRRPRQVLVVWGVSLGAIALIYWLEYSAPALHELLLPFYWIILALAFYLTWRWLRARSRKDRRDQDRRHADRRDENDTTSS
Ga0208850_10000387	F071798	GGA	MEAEAITRLTDGLQPLAIRAILVQCLVGELAPSAAISRMLALEGASTVRAAIDDVTHRAATISRASDMLVHDRVDELTQIFVEQVCEVADVGEATKSRTGYGLGLASRVSKSGDRDESQGSDPRI

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