NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208689_1021330

Scaffold Ga0208689_1021330


Overview

Basic Information
Taxon OID3300025459 Open in IMG/M
Scaffold IDGa0208689_1021330 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1741
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026357Metagenome / Metatranscriptome198Y
F074503Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0208689_10213301F074503GGAGGVQRCVLKWLLLLLAAGCLQAEQAPSTPASDAIFLWLAGGISSARIQRLIQTQNAQTQNAQTRDEAQTFSCHATSLCTRALQKAGADSSLIQSLVRQSPDRK
Ga0208689_10213304F026357N/ALYSESEVKAGSKLELVIMLPPGLGLGPGGWTLCEASVVRVRESEGKGMGIAATIDRIELLPELS

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