NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209120_1002909

Scaffold Ga0209120_1002909


Overview

Basic Information
Taxon OID3300025462 Open in IMG/M
Scaffold IDGa0209120_1002909 Open in IMG/M
Source Dataset NameHot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5476
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Washington, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067920Metagenome / Metatranscriptome125N
F084461Metagenome / Metatranscriptome112N
F101504Metagenome / Metatranscriptome102N
F102725Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209120_10029091F102725GGAVYEKKPEPEQNKEYRIINVEQQKGQFGEYIRVTLEDSEKKQYSSALWVKDTVSSTSKAGAFALALGTNPETWINKYIKVISWTPKNRVIIEIPKGIDTKTETKKVK
Ga0209120_100290910F084461GGGGGMSLNLGDLLKSNKAILQSENGKIVLRITFDDLVQAIINGLPEQSKKVVSITHDDKQLVISFDASILSGTIGGIAR
Ga0209120_10029093F101504AGGAMLNYLTTNFDKVLTINTVSQASLKQIGNELNNFDGILYIDDIGSINTEYMRITTMTTLTYLAYQHYLRRLDSTTNLEIKNFNGSLIINIQPAIFNEIANNTSFEANIMDKSYRIYNMRIPSNKPFQHPKIKELQHIKDKFDKMKVDIDKHKVEALADNFMTFNSPVRRYKIVYNFVKLTAILNEHKTAISSDYNFVSKMLLNNIIESELLQRKGITNTFKFNVFLFNTMLLAKEYGNVFHYDKLKKYLNVGTKTIYNYAKMNNIKIDNGYIIYDDERIIRVLKNVIH
Ga0209120_10029099F067920N/AMPADLVFGISDQGLFGAISSVAEYILSFIKVLVEQASIYAVDFLKQMWSNPTQTITFLTLLGVVLI
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