NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209120_1004149

Scaffold Ga0209120_1004149


Overview

Basic Information
Taxon OID3300025462 Open in IMG/M
Scaffold IDGa0209120_1004149 Open in IMG/M
Source Dataset NameHot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4161
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Washington, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075084Metagenome / Metatranscriptome119N
F076263Metagenome / Metatranscriptome118Y
F080245Metagenome115N
F080247Metagenome / Metatranscriptome115Y
F081547Metagenome / Metatranscriptome114Y
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209120_100414910F080247N/AMIVWGKLIECLIDTDINYLNGEPFNTQLRMRGKFLTFGNVNIFEKTMPAGLETEQTIQICSPIDATFIAYYQGMVAIMSFYFRDSNLYANISLTDPDT
Ga0209120_10041495F075084GAGMRPCRKDVCLLYSLGADYAKLIDFTNQNPQGRLFRAGARAMAYAIGLMRSWYGYDTGVLLERALRRILRRSVIYCRIMERLGLQSEYCRRYTYYNGVPCDLVSVFTVDMAYGDIMHMITNYNSETVSKIFTKMTEICSTYEVTQ
Ga0209120_10041496F080245N/AMIFVWSAKVVIPGFRDEIFVSPALINKYVELTEDVYEVGMFMVPHKGHSLLFLPTMVIKVDEELLKKLEETSIEDLNYPLNTITNVFT
Ga0209120_10041497F087442GAGGMMREGLVKAGNLVIDCKPCYIAGTGFNKDDIYVVSEGTVVFKWYDKIAVITVGEEGTKVNLLDIIDVRFLVERNENCLATRL
Ga0209120_10041498F081547GAGMPYLRGIFVNIGEETYYLSCGIIKGGNLDTETYTINNPELMMVKMGRDIYIVTNQLKLIVPVEPIRVLLSSETSKVYNEALSQGNEVKPA
Ga0209120_10041499F076263GGAGMSSAEDLSAILDDLEDLCARLPEGVIFHPTLEIRRKFANEEATYIKFDCKNHRYILTIVRTGIAKTTRVSSREELFKKIFPEYTPGYEGSYTEEYWGEE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.