NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209120_1012629

Scaffold Ga0209120_1012629


Overview

Basic Information
Taxon OID3300025462 Open in IMG/M
Scaffold IDGa0209120_1012629 Open in IMG/M
Source Dataset NameHot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1812
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Washington, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026046Metagenome / Metatranscriptome199Y
F062913Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0209120_10126291F062913N/AMERSKAVEVFNNINCEGNTQIVSTINRALELIRSGECDKAYNELNKLKMFL
Ga0209120_10126293F026046N/AMAGLLEIYEGYLNKPTCDTLDNIRIGKDGRGYRKLRKEDIPIEWLNYAKKHGIKVRDRTLIIGDALDPIDPNCILLMNAFYPQTESGQWCCTPSIAQYTNKGNQTPTQTCFSANGANVINIPYVGIALIDTNGNLDLLMDTNSIISSATPNWINPTSNPPSVLCGTSQYNGTVTIQFSAMPTTIFNISTAYLLIGTNTLASGGVFSTVIEWNGINYQPQINLPLTINIYLGVQ
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