NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209120_1016075

Scaffold Ga0209120_1016075


Overview

Basic Information
Taxon OID3300025462 Open in IMG/M
Scaffold IDGa0209120_1016075 Open in IMG/M
Source Dataset NameHot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1524
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Washington, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F076262Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209120_10160751F011097AGAAGGMIRDIPLYTSGGTDAFTGLSVGGSPITGNGSNYQVLRFHPNYARLMIFITGLSGTSPSIQFTIGSPYGSNNYTLPPITSPQYVYIIGNENKTIITYLNTNAQVLQQVELPYNIFLNGVSVSWSVSGTSPSITAYIHFEFEDEEEDE
Ga0209120_10160752F008949AGGAGGMSNQSVKLGTQTITPKVQDMGNSYYIELQVKITRYSGDSVNHTIDVKFTCIKYKQVVVPSTNPLSPPTVKTVEKTIQECVDEWYDTHKSVYEVA
Ga0209120_10160753F076262AGGTGGMSFNPVIKGSYTLVSPQSVSVAASSSSPVSISFTPLGAGELYVYITLPSGVTASISIGGQSVSLSNGGNQFIIPANTPIDNITINNSNLSAVSVVVWALFIEVA
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Institute for Fundamental Biomedical Research
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