NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209120_1018927

Scaffold Ga0209120_1018927


Overview

Basic Information
Taxon OID3300025462 Open in IMG/M
Scaffold IDGa0209120_1018927 Open in IMG/M
Source Dataset NameHot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1354
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Washington, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101502Metagenome102N
F105516Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209120_10189274F105516N/AMPRALVTILAMGALNPNLKTFKVIENERVSATDDGTIKCTGESCNANGTYIILETEHPNAKELYDALRKVRILKIEIVISGLPRQLLTRLEFLVGKPIRDNATVKYTWHKMPSFEELALVLNDLNLS
Ga0209120_10189275F101502AGGMSQVPKTPIIAFTIILGIGLAVVIIGASEPLRPGIGAVVVLLASIACIPAYIWLRHPGLLIAIELGVGVLLTIIITNWLHGINPLTSLEWYYQAL
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