Scaffold Ga0208497_1013712

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208497_1013712

Scaffold Ga0208497_1013712

Overview

Basic Information
Taxon OID	3300025466 Open in IMG/M
Scaffold ID	Ga0208497_1013712 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Aug07 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2002
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005200	Metagenome	408	Y
F017776	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208497_10137121	F017776	N/A	RIKMDKVTLSTTLVNNIMAYLGTKPFQEVFQLIDAVQKEAQAQTPAAPVEQ
Ga0208497_10137124	F005200	N/A	MDPITVFAACKAAHAGIRECIDLYQDFKKDGKDVGDIVNDIGKNLGSFFTHQETLKEAEKEERLKPLDKKTSINEEAMNRIMRQEQIQRMETELREMIIYQVGMPGLWSKFVDMREVVRKEREKIEREQKKPLKWLHSKGGSSLTNGKSEQRYALAF

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