NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208819_1047515

Scaffold Ga0208819_1047515


Overview

Basic Information
Taxon OID3300025498 Open in IMG/M
Scaffold IDGa0208819_1047515 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1007
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003942Metagenome460N
F022571Metagenome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0208819_10475152F003942GGAGMLGHRLNPTIHRYEDVELIEVHSEYLECRFLVAKDEWETGQPLLNLFSPLDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEIQRQSEHTIYAENLSAMLYGTGPNPARS
Ga0208819_10475153F022571AGGMQITVWSVAADDDNGTYASVHETESAAYRRLIQLTVDADNKDNVAKAEAFMEAEDFDSLDEWIHEEVIEPLSTYSVDQQTLDLSALPAPAPTANERALSRRELASVLHGLRLMQEQWEPK
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Institute for Fundamental Biomedical Research
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