NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208903_1016689

Scaffold Ga0208903_1016689


Overview

Basic Information
Taxon OID3300025502 Open in IMG/M
Scaffold IDGa0208903_1016689 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2359
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022997Metagenome212N
F040489Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0208903_10166892F040489AGGAGMTREEMMADGTQYCCYCGCEKARFQCCGENHFQTFAQMSADEQDEFFQQGEEQWLN
Ga0208903_10166893F022997AGGAGMAKLIDFPIGLNEGESRLDFDPDEALTGAVGLLKEVVIVGYEADGSLYFASNRANAPDVLWLLKQAEQILLAIEREMRT

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