NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208903_1030897

Scaffold Ga0208903_1030897


Overview

Basic Information
Taxon OID3300025502 Open in IMG/M
Scaffold IDGa0208903_1030897 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1498
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000681Metagenome / Metatranscriptome939Y
F032868Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0208903_10308971F032868N/ARAFHEQDDICHVSGPEFVDGQTLTITEQDKDGNALMDDDGNFMTDEMVDFKQFKKKGVTVKCTAEHNPSSDSCKDLHYVFSQYFNKGGWYTTEPIKTGPDGIDFKKMKIDYENCDGFKCFSRIEYDGENYDLEEDSVGKSSSFYVMEGDDV
Ga0208903_10308973F000681AGGAGMYKRDQHYNEKISKADLEIEISKHYKNEHGLIIQLMSNCVQDDLIETRHELSCANEELWSLNDWPEGEGFGSSDRHSYIDRVKESIAFERKFLQAETELVSINRLEESPKNDDVRSYMKMNDKIAEGMAS
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